AMSC Microarray Seminar, Fall '01

AMSC 699 (Applied Mathematics Seminar) , Fall '01

Mathematical Topics in Functional Genomics
and DNA Microarrays

W 4-5, Rm Mth 3206*

* NOTE: the designated room for this seminar in the Schedule of Classes is
Mth 0305, and we will sometimes have to go back there, but until further notice
we will meet in the larger and more comfortable Mth 3206
(the Colloquium Room on the 3rd floor of the Math Building, opposite the
Coffee Lounge) .

This seminar will treat various topics of current statistical and
mathematical research interest connected with DNA sequences and
their correspondence with protein structure and function. Depending
upon student interest, primary emphasis will center on Statistical
methodology for the analysis and interpretation of an exciting new
source of voluminous biomedical data, the cDNA Microarray.

For the current version of a fairly extensive annotated reading list on DNA sequences
and Microarrays, click here.

Note to student speakers:

My office hours are Monday 11-12 and 4-5, and Thursday 2-3:15. I will often
be available except on Tuesdays, but please send an e-mail or arrange with me
in class for an office appointment.

Schedule of Talks -- See Below for Room numbers, which vary !!

Overview talk on Biological Background: August 29, Eric Slud.

here

Second overview talk (Microarray Data & Statistical Problems): Sept. 5, Eric Slud.

here

Gunay Dogan (Hidden Markov Models & Sequence Alignment): Sept. 19, Room Mth 0305 .

Kartik Parija (Hierarchical Clustering, Eisen et al. paper): Sept. 26 , Room Mth 3206 .

Cory Hauck (MLE analysis of Microarray Data): Oct. 3 , Room Mth 0305 .

Matthew Feist (Bootstrapping Thresholds for Microarrays): Oct. 10 , Room Mth 3206 .

Sophie Tsou (2nd talk on HMM's in genomics): Oct. 17 , Room Mth 3206 .

Matt Radio (Supervised learning & Support Vector Machines): Oct. 24 , Room Mth 3206 .

Corey Gonzalez (Phylogeny): Oct. 31 , Room Mth 3206 .

Franklin Gavilanez (Discrimination & Clustering): Nov. 7, Room Mth 3206.

William Howell (Cliassification via `Self-organizing maps'): Nov. 14, Room Mth 3206.

Xian-Fang Wu (Pattern recognition topic): Nov. 21, Room Mth 3206.

Joycelyn Wilson (Data mining and visualization topic): Nov. 28, Room Mth 3206.

NOTE THAT THE LAST TWO TALKS WILL BE IN Mth 0305 !!! This is a CHANGE !!

Stacey Nicholls (`Plaid Models'): Dec. 5, Room Mth 0305.

Feiyue Li (Clustering topic): Dec. 12, Room Mth 0305.

AMSC 699 (Applied Mathematics Seminar) , Fall '01

Mathematical Topics in Functional Genomics
and DNA Microarrays

W 4-5, Rm Mth 3206*

Note to student speakers:

Schedule of Talks -- See Below for Room numbers, which vary !!

Return to my home page.

© Eric V Slud, November 26, 2001.

AMSC 699 (Applied Mathematics Seminar) , Fall '01

Mathematical Topics in Functional Genomics and DNA Microarrays

W 4-5, Rm Mth 3206*

Note to student speakers:

Schedule of Talks -- See Below for Room numbers, which vary !!

Return to my home page.

© Eric V Slud, November 26, 2001.

Mathematical Topics in Functional Genomics
and DNA Microarrays